Resolve "Add AbstractPort" and "Change Port ID to Port Index"

• Changes the port module by introducing a fully abstract "Port" interface and then an "AbstractPort" abstract class that implements the Port interface, which is in line with the class diagram.
• Renames many functions such as "connect_port" to "connect" and "connect_signal" to "add_signal" for better useability and to fit with the class diagram.
• Moves "AbstractGraphComponent" to the graph_component module.
• Also renames functions such as "connect_source" to "set_source" in signal.
• Refactors Port ID to Port Index as in #49 (closed)
• Move AbstractOperation implementation to the operation module.
• Mode BFS implementation from the utilites module to the operation module to solve cyclic imports.

Closes #48 (closed) Closes #49 (closed)

b_asic/__init__.py

@@ -2,7 +2,6 @@
 Better ASIC Toolbox.
 TODO: More info.
 """
-from b_asic.abstract_operation import *
 from b_asic.core_operations import *
 from b_asic.graph_component import *
 from b_asic.graph_id import *
@@ -13,4 +12,3 @@ from b_asic.schema import *
 from b_asic.signal_flow_graph import *
 from b_asic.signal import *
 from b_asic.simulation import *
-from b_asic.utilities import *